Microlist – Microscopy courses, software, meetings & jobs

µlist

A searchable database of resources
for light and electron microscopists

Global Bioimaging shares International Recommendations for Career Paths in Imaging Core Facilities

CareerPath/ ImagingScientists/ CollaborativeEffort / GlobalChallenges

Electron and Light Microscopy Specialist

For Baylor University
In Waco

Technical Sales Specialist

For Amerigo Scientific
In New York

Virtual Tour: Electron Microscopy Imaging

Allen Institute for Brain Science's Electron Microscopy program

Microscopy Image Browser

Video playlist on how to use Microscopy Image Browser

Electron microscopy manuals, lectures and tutorials

A variety of video resources for EM

Software Demo IMOD

Videos from the NBCR Summer Training Program

Harald Hess lecture - “Large Volume 3D Imaging by FIBSEM and Cryo Fluorescence for Cell Biology and Neural"

3D-CLEM lecture by Harald Hess

“Volume Electron Microscopy: Concepts, Correlations and Computations” with Kedar Narayan

Volume EM Series with Kedar Narayan

Correlative super resolution and electron microscopy methods for nanomedicine

Correlative microscopy talk by Silvia Pujals

Virtual Pub: Building a Volume EM community

An introduction to the Eurobioimaging 'virtual pub' series

Courses

Software & Other Tools

eLearning

Conferences & Symposia

CellOrganizer

Model learning tools
Created by Murphy Lab, Carnegie Mellon

Microscopy Training Resources List

A list of microscopy training resources
Created by BioImaging North America

pyLattice

Python library for lattice light-sheet image analysis
Created by Johannes Schöneberg

miCube Open Source Microscope

Plans to build your own fluorescence microscope
Created by Hohlbein Lab

Bio-Formats

For reading proprietary image data and metadata
Created by Open Microscopy Environment

TIFFFolder

Easily parse/access a subset of data from a folder of TIFFs
Created by Talley Lambert, Harvard Medical School

VisBio

Visualization and analysis of multidimensional image data
Created by C Rueden & A Sorber

easyFRAP

Quantitative and qualitative analysis of FRAP data
Created by Lygerou Lab

ScanImage

Acquisition software for neurobiology apps
Created by Vidrio Technologies

fairSIM

SIM reconstruction software
Created by Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser

OpenFlexure Microscope

an open-source 3D-printed microscope
Created by R Bowman et al

LLSpy

Python library for lattice light sheet data processing
Created by Talley Lambert, Harvard Medical School

Icy

Platform for bioimage informatics
Created by Quantitative Image Analysis Unit, Institut Pasteur

Nemonic Consortium Resources & Blog

Resource list and blog for multiphoton microscopy

Dragonfly (Non-Commercial Licensing)

Non-commercial license for Dragonfly software
Licensed by Object Research Systems

FIJI

ImageJ bundled with a lot of plugins
Created by Curtis Rueden & the ImageJ development team at LOCI, U. Wisconsin-Madison

SpekCheck

For filterset optimisation
Created by Micron Oxford

BioImageXD

Analyzing, processing & visualizing nD images

SIMcheck

ImageJ tools for assessing SIM data quality and reliability
Created by Micron Oxford

Image Analysis Focused Interest Group

Content to support the image analysis community
Created by Royal Microscopy Society

Electron Microscopy

19 listings

Fluorescence Microscopy

14 listings

Confocal Microscopy

9 listings

Super-Resolution Microscopy

6 listings

62 listings

Fluorescent Proteins

8 listings

Light Sheet Microscopy

14 listings

Quantitative Microscopy

5 listings

Machine Learning

19 listings

Master's Degree Programme in Biomedical Imaging

Location Turku, Finland, 60.45181, 22.26663

Nikon Imaging Center at Harvard Medical School Workshops

Format: In-person
Location Boston, MA, USA, 42.36008, -71.05888

1 listing

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16 listings

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1 listing

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